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1. hiv-rna-velocity hiv-rna-velocity Public

   RNA velocity analysis for samples from model of HIV latency

   Jupyter Notebook

2. ioerger/transit ioerger/transit Public

   Repository for the TRANSIT and TPP tools developed by the Ioerger Lab

   Python 22 19

3. essential_genes essential_genes Public

   Forked from joelbader/essential_genes

   Reproduces our results presented in our upcoming paper: "Identifying the essential genes of Mycobacterium avium subsp. hominissuis with Tn-Seq using a rank-based filter procedure."

   Python

4. fast_allvsall_scripts fast_allvsall_scripts Public

   Forked from joelbader/fast_allvsall_scripts

   Scripts for quickly comparing the proteomes of multiple organisms with Needleman-Wunsch

   Python

5. regulon-enrichment regulon-enrichment Public

   Forked from joelbader/regulon-enrichment

   Reproduces the analysis for our paper: Gene enrichment analysis reveals major regulators of Mycobacterium tuberculosis gene expression in two models of antibiotic tolerance

   Python

6. hypersusceptibility_MAC109 hypersusceptibility_MAC109 Public

   Python