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Fix flushing behaviour in threaded mode. #59

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Sep 24, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.rst
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,8 @@ Changelog

version 0.5.1-dev
-----------------
+ Fix a bug where flushing in threaded mode did not write the data to the
output file.
+ Threaded reading and writing do no longer block exiting when an exception
occurs in the main thread.

Expand Down
49 changes: 25 additions & 24 deletions src/zlib_ng/gzip_ng_threaded.py
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ def open(filename, mode="rb", compresslevel=gzip_ng._COMPRESS_LEVEL_TRADEOFF,
gzip_file = io.BufferedReader(
_ThreadedGzipReader(filename, block_size=block_size))
else:
gzip_file = io.BufferedWriter(
gzip_file = FlushableBufferedWriter(
_ThreadedGzipWriter(
filename,
mode.replace("t", "b"),
Expand Down Expand Up @@ -167,6 +167,12 @@ def closed(self) -> bool:
return self._closed


class FlushableBufferedWriter(io.BufferedWriter):
def flush(self):
super().flush()
self.raw.flush()


class _ThreadedGzipWriter(io.RawIOBase):
"""
Write a gzip file using multiple threads.
Expand Down Expand Up @@ -315,30 +321,35 @@ def write(self, b) -> int:
self.input_queues[worker_index].put((data, zdict))
return len(data)

def flush(self):
def _end_gzip_stream(self):
self._check_closed()
# Wait for all data to be compressed
for in_q in self.input_queues:
in_q.join()
# Wait for all data to be written
for out_q in self.output_queues:
out_q.join()
# Write an empty deflate block with a lost block marker.
self.raw.write(zlib_ng.compress(b"", wbits=-15))
trailer = struct.pack("<II", self._crc, self._size & 0xFFFFFFFF)
self.raw.write(trailer)
self._crc = 0
self._size = 0
self.raw.flush()

def flush(self):
self._end_gzip_stream()
self._write_gzip_header()

def close(self) -> None:
if self._closed:
return
self.flush()
self._end_gzip_stream()
self.stop()
if self.exception:
self.raw.close()
self._closed = True
raise self.exception
# Write an empty deflate block with a lost block marker.
self.raw.write(zlib_ng.compress(b"", wbits=-15))
trailer = struct.pack("<II", self._crc, self._size & 0xFFFFFFFF)
self.raw.write(trailer)
self.raw.flush()
if self.closefd:
self.raw.close()
self._closed = True
Expand Down Expand Up @@ -371,41 +382,31 @@ def _compress(self, index: int):
def _write(self):
index = 0
output_queues = self.output_queues
fp = self.raw
total_crc = 0
size = 0
while self._calling_thread.is_alive():
out_index = index % self.threads
output_queue = output_queues[out_index]
try:
compressed, crc, data_length = output_queue.get(timeout=0.05)
except queue.Empty:
if not self.running:
self._crc = total_crc
self._size = size
return
continue
total_crc = zlib_ng.crc32_combine(total_crc, crc, data_length)
size += data_length
fp.write(compressed)
self._crc = zlib_ng.crc32_combine(self._crc, crc, data_length)
self._size += data_length
self.raw.write(compressed)
output_queue.task_done()
index += 1

def _compress_and_write(self):
if not self.threads == 1:
raise SystemError("Compress_and_write is for one thread only")
fp = self.raw
total_crc = 0
size = 0
in_queue = self.input_queues[0]
compressor = self.compressors[0]
while self._calling_thread.is_alive():
try:
data, zdict = in_queue.get(timeout=0.05)
except queue.Empty:
if not self.running:
self._crc = total_crc
self._size = size
return
continue
try:
Expand All @@ -415,9 +416,9 @@ def _compress_and_write(self):
self._set_error_and_empty_queue(e, in_queue)
return
data_length = len(data)
total_crc = zlib_ng.crc32_combine(total_crc, crc, data_length)
size += data_length
fp.write(compressed)
self._crc = zlib_ng.crc32_combine(self._crc, crc, data_length)
self._size += data_length
self.raw.write(compressed)
in_queue.task_done()

def _set_error_and_empty_queue(self, error, q):
Expand Down
16 changes: 16 additions & 0 deletions tests/test_gzip_ng_threaded.py
Original file line number Diff line number Diff line change
Expand Up @@ -230,3 +230,19 @@ def test_threaded_program_can_exit_on_error(tmp_path, mode, threads):
)
f.write("raise Exception('Error')\n")
subprocess.run([sys.executable, str(program)])


@pytest.mark.parametrize("threads", [1, 2])
def test_flush(tmp_path, threads):
test_file = tmp_path / "output.gz"
with gzip_ng_threaded.open(test_file, "wb", threads=threads) as f:
f.write(b"1")
f.flush()
assert gzip.decompress(test_file.read_bytes()) == b"1"
f.write(b"2")
f.flush()
assert gzip.decompress(test_file.read_bytes()) == b"12"
f.write(b"3")
f.flush()
assert gzip.decompress(test_file.read_bytes()) == b"123"
assert gzip.decompress(test_file.read_bytes()) == b"123"
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