initiate typing checks

[yarikoptic]

• tox.ini setup
• CI with type checking at least some files if cannot be done through out at once. thus marking easy since not full type annotation is requested

current state of running mypy

❯ git grep mypy
❯ mypy heudiconv
heudiconv/heuristics/multires_7Tbold.py:25: error: Cannot find implementation or library stub for module named "dicom"  [import]
heudiconv/external/pydicom.py:8: error: Cannot find implementation or library stub for module named "pydicom"  [import]
heudiconv/external/pydicom.py:11: error: Cannot find implementation or library stub for module named "dicom"  [import]
heudiconv/due.py:55: error: Skipping analyzing "duecredit": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/cli/monitor.py:12: error: Cannot find implementation or library stub for module named "inotify.adapters"  [import]
heudiconv/cli/monitor.py:12: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
heudiconv/cli/monitor.py:12: error: Cannot find implementation or library stub for module named "inotify"  [import]
heudiconv/cli/monitor.py:13: error: Cannot find implementation or library stub for module named "inotify.constants"  [import]
heudiconv/cli/monitor.py:15: error: Cannot find implementation or library stub for module named "tinydb"  [import]
heudiconv/utils.py:19: error: Cannot find implementation or library stub for module named "nipype.utils.filemanip"  [import]
heudiconv/utils.py:53: error: List or tuple literal expected as the second argument to "namedtuple()"  [misc]
heudiconv/tests/utils.py:61: error: Skipping analyzing "datalad": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/heuristics/reproin.py:159: error: Need type annotation for "fix_accession2run" (hint: "fix_accession2run: Dict[<type>, <type>] = ...")  [var-annotated]
heudiconv/heuristics/reproin.py:170: error: Need type annotation for "protocols2fix" (hint: "protocols2fix: Dict[<type>, <type>] = ...")  [var-annotated]
heudiconv/heuristics/reproin.py:197: error: Need type annotation for "dicoms2skip" (hint: "dicoms2skip: List[<type>] = ...")  [var-annotated]
heudiconv/external/dcmstack.py:27: error: Cannot find implementation or library stub for module named "dcmstack"  [import]
heudiconv/dicoms.py:24: error: Cannot find implementation or library stub for module named "nibabel.nicom.dicomwrappers"  [import]
heudiconv/dicoms.py:24: error: Cannot find implementation or library stub for module named "nibabel.nicom"  [import]
heudiconv/dicoms.py:24: error: Cannot find implementation or library stub for module named "nibabel"  [import]
heudiconv/dicoms.py:365: error: Missing return statement  [return]
heudiconv/dicoms.py:548: error: Cannot find implementation or library stub for module named "nipype"  [import]
heudiconv/dicoms.py:606: error: Cannot find implementation or library stub for module named "dcmstack.extract"  [import]
heudiconv/dicoms.py:606: error: Cannot find implementation or library stub for module named "dcmstack"  [import]
heudiconv/external/dlad.py:18: error: Skipping analyzing "datalad.api": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/external/dlad.py:37: error: Skipping analyzing "datalad": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/external/dlad.py:39: error: Skipping analyzing "datalad.support.annexrepo": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/external/dlad.py:40: error: Skipping analyzing "datalad.support.external_versions": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/bids.py:618: error: Cannot find implementation or library stub for module named "nibabel"  [import]
heudiconv/convert.py:670: error: Cannot find implementation or library stub for module named "nipype"  [import]
heudiconv/convert.py:675: error: Cannot find implementation or library stub for module named "nipype.interfaces.dcm2nii"  [import]
heudiconv/convert.py:733: error: Cannot find implementation or library stub for module named "nipype.interfaces.base"  [import]
heudiconv/main.py:299: error: Skipping analyzing "etelemetry": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/tests/test_regression.py:17: error: Skipping analyzing "datalad.support.exceptions": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/tests/test_monitor.py:7: error: Cannot find implementation or library stub for module named "tinydb"  [import]
heudiconv/tests/test_monitor.py:16: error: First argument to namedtuple() should be "Header", not "header"  [name-match]
heudiconv/tests/test_monitor.py:71: error: Argument 1 to "CalledProcessError" has incompatible type "str"; expected "int"  [arg-type]
heudiconv/tests/test_monitor.py:71: error: Argument 2 to "CalledProcessError" has incompatible type "int"; expected "Union[Union[str, bytes, PathLike[str], PathLike[bytes]], Sequence[Union[str, bytes, PathLike[str], PathLike[bytes]]]]"  [arg-type]
heudiconv/tests/test_main.py:121: error: Skipping analyzing "datalad.api": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/tests/test_heuristics.py:25: error: Skipping analyzing "datalad.api": module is installed, but missing library stubs or py.typed marker  [import]
heudiconv/tests/test_bids.py:20: error: Cannot find implementation or library stub for module named "nibabel"  [import]
heudiconv/tests/test_bids.py:59: error: Skipping analyzing "datalad.support.exceptions": module is installed, but missing library stubs or py.typed marker  [import]
Found 40 errors in 18 files (checked 48 source files)

[github-actions]

🚀 Issue was released in v0.13.0 🚀