Merge pull request #1214 from nipy/rel/5.1.0

REL: 5.1.0

Author: effigies

.mailmap

@@ -30,6 +30,7 @@ Dimitri Papadopoulos Orfanos <[email protected]> <DimitriPapadopoulos@
 Dimitri Papadopoulos Orfanos <[email protected]> <[email protected]>
 Eric Larson <[email protected]> Eric89GXL <[email protected]>
 Eric Larson <[email protected]> larsoner <[email protected]>
+Fabian Perez <[email protected]>
 Fernando Pérez-García <[email protected]> Fernando <[email protected]>
 Félix C. Morency <[email protected]> Felix C. Morency <[email protected]>
 Félix C. Morency <[email protected]> Félix C. Morency <[email protected]>

.zenodo.json

@@ -73,6 +73,10 @@
       "name": "Lee, Gregory R.",
       "orcid": "0000-0001-8895-2740"
     },
+    {
+      "name": "Baratz, Zvi",
+      "orcid": "0000-0001-7159-1387"
+    },
     {
       "name": "Wang, Hao-Ting",
       "orcid": "0000-0003-4078-2038"
@@ -125,10 +129,6 @@
       "name": "Goncalves, Mathias",
       "orcid": "0000-0002-7252-7771"
     },
-    {
-      "name": "Baratz, Zvi",
-      "orcid": "0000-0001-7159-1387"
-    },
     {
       "affiliation": "Montreal Neurological Institute and Hospital",
       "name": "Markello, Ross",
@@ -229,6 +229,9 @@
     {
       "name": "Amirbekian, Bago"
     },
+    {
+      "name": "Christian, Horea"
+    },
     {
       "name": "Nimmo-Smith, Ian"
     },
@@ -274,6 +277,9 @@
     {
       "name": "Fauber, Bennet"
     },
+    {
+      "name": "Perez, Fabian"
+    },
     {
       "name": "Roberts, Jacob"
     },

Changelog

@@ -25,6 +25,48 @@ Eric Larson (EL), Demian Wassermann, Stephan Gerhard and Ross Markello (RM).
 
 References like "pr/298" refer to github pull request numbers.
 
+5.1.0 (Monday 3 April 2023)
+===========================
+
+New feature release in the 5.1.x series.
+
+Enhancements
+------------
+* Make :mod:`nibabel.imagestats` available with ``import nibabel`` (pr/1208)
+  (Fabian Perez, reviewed by CM)
+* Use symmetric threshold for identifying unit quaternions on qform
+  calculations (pr/1182) (CM, reviewed by MB)
+* Type annotations for :mod:`~nibabel.loadsave` (pr/1213) and
+  :class:`~nibabel.spatialimages.SpatialImage` APIs (pr/1179),
+  :mod:`~nibabel.deprecated`, :mod:`~nibabel.deprecator`,
+  :mod:`~nibabel.onetime` and :mod:`~nibabel.optpkg` modules (pr/1188),
+  :mod:`~nibabel.volumeutils` (pr/1189), :mod:`~nibabel.filename_parser` and
+  :mod:`~nibabel.openers` (pr/1197) (CM, reviewed by Zvi Baratz)
+
+Bug fixes
+---------
+* Require explicit overrides to write GIFTI files that contain data arrays
+  with data types not permitted by the GIFTI standard (pr/1199) (CM, reviewed
+  by Alexis Thual)
+
+Maintenance
+-----------
+* Move compression detection logic into a private ``nibabel._compression``
+  module, resolving unexpected errors from pyzstd. (pr/1212) (CM)
+* Improved consistency of docstring formatting (pr/1200) (Zvi Baratz, reviewed
+  by CM)
+* Modernized README text (pr/1195) (Zvi Baratz, reviewed by CM)
+* Updated README badges to include package distributions (pr/1192) (Horea
+  Christian, reviewed by CM)
+* Removed all dependencies on distutils and setuptools (pr/1190) (CM,
+  reviewed by Zvi Baratz)
+* Add a ``_version.pyi`` stub to allow mypy_ to run without building nibabel
+  (pr/1210) (CM)
+
+
+.. _mypy: https://mypy.readthedocs.io/
+
+
 5.0.1 (Sunday 12 February 2023)
 ===============================
 

doc/source/index.rst

@@ -123,6 +123,8 @@ contributed code and discussion (in rough order of appearance):
 * Andrew Van
 * Jérôme Dockès
 * Jacob Roberts
+* Horea Christian
+* Fabian Perez
 
 License reprise
 ===============

doc/source/installation.rst

@@ -86,7 +86,7 @@ Requirements
 *  Python_ 3.8 or greater
 *  NumPy_ 1.19 or greater
 *  Packaging_ 17.0 or greater
-*  Setuptools_
+*  importlib-resources_ 1.3 or greater (or Python 3.9+)
 *  SciPy_ (optional, for full SPM-ANALYZE support)
 *  h5py_ (optional, for MINC2 support)
 *  PyDICOM_ 1.0.0 or greater (optional, for DICOM support)

doc/source/links_names.txt

@@ -114,6 +114,7 @@
 .. _python imaging library: https://pypi.python.org/pypi/Pillow
 .. _h5py: https://www.h5py.org/
 .. _packaging: https://packaging.pypa.io
+.. _importlib-resources: https://importlib-resources.readthedocs.io/
 
 .. Python imaging projects
 .. _PyMVPA: http://www.pymvpa.org

min-requirements.txt

@@ -1,4 +1,4 @@
 # Auto-generated by tools/update_requirements.py
 numpy ==1.19
 packaging ==17
-setuptools
+importlib_resources ==1.3; python_version < '3.9'

pyproject.toml

@@ -13,7 +13,7 @@ requires-python = ">=3.8"
 dependencies = [
   "numpy >=1.19",
   "packaging >=17",
-  "importlib_resources; python_version < '3.9'",
+  "importlib_resources >=1.3; python_version < '3.9'",
 ]
 classifiers = [
   "Development Status :: 5 - Production/Stable",

requirements.txt

@@ -1,4 +1,4 @@
 # Auto-generated by tools/update_requirements.py
 numpy >=1.19
 packaging >=17
-setuptools
+importlib_resources >=1.3; python_version < '3.9'