implement read to genome distance calculations #35

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4 tasks

mahmudhera opened this issue Dec 19, 2024 · 0 comments

Open

4 tasks

implement read to genome distance calculations #35

mahmudhera opened this issue Dec 19, 2024 · 0 comments

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mahmudhera commented Dec 19, 2024

Given a metagenome with many reads, and given a set of reference genomes,

generate the read-to-genome distances above some threshold
benchmark against krepp (and other tools)
benchmark time and memory in the process
use a different tool name if needed

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